Command line Training Set First Motif Summary of Motifs Termination Explanation


Search sequence databases with these motifs using
MAST.
Submit these motifs to BLOCKS multiple alignment processor.
Build and use a motif-based hidden Markov model (HMM) using Meta-MEME.


MEME - Motif discovery tool

MEME version 3.0 (Release date: 2002/04/02 00:11:59)

For further information on how to interpret these results or to get a copy of the MEME software please access http://meme-suite.org.

This file may be used as input to the MAST algorithm for searching sequence databases for matches to groups of motifs. MAST is available for interactive use and downloading at http://meme-suite.org.


REFERENCE

If you use this program in your research, please cite:

Timothy L. Bailey and Charles Elkan, "Fitting a mixture model by expectation maximization to discover motifs in biopolymers", Proceedings of the Second International Conference on Intelligent Systems for Molecular Biology, pp. 28-36, AAAI Press, Menlo Park, California, 1994.


TRAINING SET

DATAFILE= bcd.s
ALPHABET= ACGT
Sequence name            Weight Length  Sequence name            Weight Length  
-------------            ------ ------  -------------            ------ ------  
bcd1                     1.0000      8  bcd2                     1.0000      8  
bcd3                     1.0000      8  bcd4                     1.0000      8  
bcd5                     1.0000      8  bcd6                     1.0000      8  
bcd7                     1.0000      8  bcd8                     1.0000      8  
bcd9                     1.0000      8  bcd10                    1.0000      8  
bcd11                    1.0000      8  bcd12                    1.0000      8  
bcd13                    1.0000      8  bcd14                    1.0000      8  
bcd15                    1.0000      8  bcd16                    1.0000      8  
bcd17                    1.0000      8  bcd18                    1.0000      8  
bcd19                    1.0000      8  bcd20                    1.0000      8  
bcd21                    1.0000      8  bcd22                    1.0000      8  
bcd23                    1.0000      8  bcd24                    1.0000      8  
bcd25                    1.0000      8  bcd26                    1.0000      8  
bcd27                    1.0000      8  bcd28                    1.0000      8  
bcd29                    1.0000      8  bcd30                    1.0000      8  
bcd31                    1.0000      8  bcd32                    1.0000      8  
bcd33                    1.0000      8  bcd34                    1.0000      8  
bcd35                    1.0000      8  bcd36                    1.0000      8  
bcd37                    1.0000      8  bcd38                    1.0000      8  
bcd39                    1.0000      8  bcd40                    1.0000      8  
bcd41                    1.0000      8  bcd42                    1.0000      8  
bcd43                    1.0000      8  bcd44                    1.0000      8  
bcd45                    1.0000      8  bcd46                    1.0000      8  
bcd47                    1.0000      8  bcd48                    1.0000      8  
bcd49                    1.0000      8  bcd50                    1.0000      8  
bcd51                    1.0000      8  


COMMAND LINE SUMMARY

This information can also be useful in the event you wish to report a
problem with the MEME software.

command: meme bcd.s -w 8 -dna -mod oops -bfile drosoph.bfile -revcomp 

model:  mod=          oops    nmotifs=         1    evt=           inf
object function=  E-value of product of p-values
width:  minw=            8    maxw=            8    minic=        0.00
width:  wg=             11    ws=              1    endgaps=       yes
nsites: minsites=       51    maxsites=       51    wnsites=       0.8
theta:  prob=            1    spmap=         uni    spfuzz=        0.5
em:     prior=   dirichlet    b=            0.01    maxiter=        50
        distance=    1e-05
data:   n=             408    N=              51
strands: + -
sample: seed=            0    seqfrac=         1
Letter frequencies in dataset:
A 0.306 C 0.194 G 0.194 T 0.306 
Background letter frequencies (from drosoph.bfile):
A 0.297 C 0.203 G 0.203 T 0.297 


P N
MOTIF 1
    width = 8     sites = 51     llr = 273     E-value = 4.3e-085

SimplifiedA22aa:::1
pos.-specificC41:::953
probabilityG1:::3:14
matrixT47::7142
.
bits 2.3
2.1
1.8 
1.6   
Information 1.4   
content 1.2   
(7.7 bits)0.9    
0.7      
0.5       
0.2        
0.0
.
Multilevel CTAATCCG
consensus TAGTC
sequence
.
NAME STRAND START P-VALUE    SITES
 
bcd47+12.64e-05 CTAATCCC
bcd45+12.64e-05 CTAATCCC
bcd33+12.64e-05 CTAATCCC
bcd50+15.47e-05 TTAATCCG
bcd15+15.47e-05 TTAATCCG
bcd34+18.31e-05 CTAATCTG
bcd7+18.31e-05 CTAATCTG
bcd29+11.02e-04 TTAATCCC
bcd41+11.35e-04 TTAAGCCG
bcd6+11.35e-04 CTAATCTC
bcd27+11.48e-04 CTAAGCTG
bcd24+11.48e-04 CTAAGCTG
bcd23+12.03e-04 CTAAGCTC
bcd17+12.70e-04 TTAATCTC
bcd9+13.02e-04 CAAATCCG
bcd5+13.02e-04 CAAATCCG
bcd10+13.35e-04 ATAATCCC
bcd12+13.94e-04 ATAAGCCG
bcd1+13.94e-04 TTAAGCTC
bcd31+14.44e-04 GTAATCCC
bcd21+15.43e-04 ATAATCTG
bcd19+15.43e-04 TAAATCCG
bcd13+15.43e-04 TAAATCCG
bcd48+16.80e-04 ATAATCTC
bcd46+16.80e-04 TTAAGCCT
bcd43+16.80e-04 TTAAGCCT
bcd3+16.80e-04 GTAATCTG
bcd39+18.57e-04 TTAATCTT
bcd30+18.57e-04 CTAATCCA
bcd20+18.57e-04 CTAATCGC
bcd26+19.50e-04 GTAAGCTG
bcd22+11.15e-03 CTAAGCCA
bcd18+11.15e-03 TTAAGCTT
bcd8+11.15e-03 CAAATCCT
bcd32+11.35e-03 TCAATCCG
bcd40+12.04e-03 TCAATCTG
bcd51+12.19e-03 ATAATCGC
bcd16+12.19e-03 ATAATCCA
bcd36+12.46e-03 CAAATCGC
bcd14+13.48e-03 GCAAGCCG
bcd49+13.62e-03 CTGAGCTC
bcd28+13.92e-03 ATGATCCG
bcd42+14.83e-03 CTAATTTT
bcd25+15.78e-03 GAAATCGC
bcd38+16.46e-03 TGAATCCT
bcd37+17.71e-03 TAAAGTTG
bcd35+17.71e-03 TAAAGTTG
bcd2+19.08e-03 ATAATTTT
bcd11+19.57e-03 TTAAGCAT
bcd4+11.91e-02 CAAATATT
bcd44+12.05e-02 AAAAGTCA


Motif 1 block diagrams

NameLowest
p-value
   Motifs
bcd47 2.6e-05
+1
bcd45 2.6e-05
+1
bcd33 2.6e-05
+1
bcd50 5.5e-05
+1
bcd15 5.5e-05
+1
bcd34 8.3e-05
+1
bcd7 8.3e-05
+1
bcd29 0.0001
+1
bcd41 0.00013
+1
bcd6 0.00013
+1
bcd27 0.00015
+1
bcd24 0.00015
+1
bcd23 0.0002
+1
bcd17 0.00027
+1
bcd9 0.0003
+1
bcd5 0.0003
+1
bcd10 0.00033
+1
bcd12 0.00039
+1
bcd1 0.00039
+1
bcd31 0.00044
+1
bcd21 0.00054
+1
bcd19 0.00054
+1
bcd13 0.00054
+1
bcd48 0.00068
+1
bcd46 0.00068
+1
bcd43 0.00068
+1
bcd3 0.00068
+1
bcd39 0.00086
+1
bcd30 0.00086
+1
bcd20 0.00086
+1
bcd26 0.00095
+1
bcd22 0.0012
+1
bcd18 0.0012
+1
bcd8 0.0012
+1
bcd32 0.0013
+1
bcd40 0.002
+1
bcd51 0.0022
+1
bcd16 0.0022
+1
bcd36 0.0025
+1
bcd14 0.0035
+1
bcd49 0.0036
+1
bcd28 0.0039
+1
bcd42 0.0048
+1
bcd25 0.0058
+1
bcd38 0.0065
+1
bcd37 0.0077
+1
bcd35 0.0077
+1
bcd2 0.0091
+1
bcd11 0.0096
+1
bcd4 0.019
+1
bcd44 0.021
+1
SCALE
| |
1 25


Motif 1 in BLOCKS format


to BLOCKS multiple alignment processor.


Motif 1 position-specific scoring matrix


Motif 1 position-specific probability matrix






Time  0.36 secs.


P N
MOTIF 2
    width = 10     sites = 34     llr = 158     E-value = 6.5e-041

SimplifiedA33214:aaa5
pos.-specificC222522:::1
probabilityG232121:::2
matrixT334227:::2
.
bits 2.3
2.1
1.8   
1.6   
Information 1.4   
content 1.2   
(6.7 bits)0.9   
0.7    
0.5     
0.2      
0.0
.
Multilevel AATCATAAAA
consensus TTATCCG
sequence GGCG
G
.
NAME STRAND START P-VALUE    SITES
 
cad34+12.15e-05 GGCCATAAAA
cad29+13.99e-05 AGACATAAAA
cad2+17.00e-05 XGTCATAAAG
cad20+19.83e-05 XXCCATAAAA
cad30+11.50e-04 AATCATAAAG
cad3+11.50e-04 XGGCCTAAAA
cad27+11.87e-04 XXTCGTAAAA
cad19+11.87e-04 XXTCGTAAAA
cad31+13.89e-04 TTCCCTAAAA
cad33+16.85e-04 TCACATAAAG
cad23+17.77e-04 XXGCTTAAAA
cad15+17.77e-04 XXGCTTAAAA
cad21+19.09e-04 XXTCGCAAAA
cad32+11.05e-03 GTGCATAAAT
cad22+11.05e-03 XXACTTAAAA
cad5+11.05e-03 XACCATAAAT
cad28+11.42e-03 AACCATAAAC
cad12+11.90e-03 XXTTCTAAAA
cad10+11.90e-03 XXTTGTAAAA
cad13+12.50e-03 XXTGGTAAAA
cad24+13.98e-03 XXAGATAAAG
cad14+13.98e-03 XXCAATAAAG
cad8+13.98e-03 XXTTTTAAAA
cad17+15.35e-03 XXTTACAAAG
cad9+15.35e-03 CAAAATAAAG
cad16+15.77e-03 XXCCCGAAAG
cad11+16.31e-03 XXTGCCAAAA
cad7+16.78e-03 XXTAATAAAT
cad26+11.29e-02 XXAATCAAAA
cad6+11.48e-02 XGAGCCAAAC
cad4+11.51e-02 XCGTGCAAAC
cad18+11.55e-02 XXGTTCAAAT
cad25+11.62e-02 ATGTGGAAAT
cad1+11.78e-02 XTAACGAAAT


Motif 1 block diagrams

NameLowest
p-value
   Motifs
cad34 2.2e-05
+1
cad29 4e-05
+1
cad2 7e-05
+1
cad20 9.8e-05
+1
cad30 0.00015
+1
cad3 0.00015
+1
cad27 0.00019
+1
cad19 0.00019
+1
cad31 0.00039
+1
cad33 0.00069
+1
cad23 0.00078
+1
cad15 0.00078
+1
cad21 0.00091
+1
cad32 0.001
+1
cad22 0.001
+1
cad5 0.001
+1
cad28 0.0014
+1
cad12 0.0019
+1
cad10 0.0019
+1
cad13 0.0025
+1
cad24 0.004
+1
cad14 0.004
+1
cad8 0.004
+1
cad17 0.0054
+1
cad9 0.0054
+1
cad16 0.0058
+1
cad11 0.0063
+1
cad7 0.0068
+1
cad26 0.013
+1
cad6 0.015
+1
cad4 0.015
+1
cad18 0.016
+1
cad25 0.016
+1
cad1 0.018
+1
SCALE
| |
1 25


Motif 1 in BLOCKS format


to BLOCKS multiple alignment processor.


Motif 1 position-specific scoring matrix


Motif 1 position-specific probability matrix






Time  0.19 secs.


P N
MOTIF 3
    width = 11     sites = 93     llr = 631     E-value = 9.2e-217

SimplifiedA1:::::52:31
pos.-specificC1:::::12233
probabilityG1:::::31533
matrixT6a9aaa15323
.
bits 2.3
2.1
1.8   
1.6    
Information 1.4     
content 1.2     
(9.8 bits)0.9     
0.7     
0.5       
0.2          
0.0
.
Multilevel TTTTTTATGAT
consensus GTCG
sequence GC
.
NAME STRAND START P-VALUE    SITES
 
hb49+11.02e-06 TTTTTTATGGG
hb4+12.03e-06 TTTTTTATGGC
hb91+14.96e-06 TTTTTTATGGT
hb90+14.96e-06 TTTTTTATGAG
hb62+14.96e-06 TTTTTTATGAG
hb26+14.96e-06 TTTTTTATGGT
hb45+16.39e-06 TTTTTTGTGCC
hb63+19.70e-06 TTTTTTGTGGT
hb16+11.16e-05 TTTTTTATGTG
hb93+11.93e-05 TTTTTTGCGCG
hb43+11.93e-05 TTTTTTATTGG
hb28+11.93e-05 TTTTTTAAGCG
hb10+11.93e-05 TTTTTTACGAG
hb51+12.61e-05 TTTTTTAAGCC
hb46+12.61e-05 TTTTTTAAGCC
hb30+12.61e-05 TTTTTTAGGCC
hb89+14.13e-05 TTTTTTATTAG
hb53+14.13e-05 TTTTTTACGAT
hb81+15.02e-05 TTTTTTGTTCC
hb65+16.93e-05 TTTTTTGTTCT
hb32+16.93e-05 TTTTTTATTAT
hb29+16.93e-05 TTTTTTGTTGT
hb72+18.08e-05 ATTTTTATGGG
hb67+18.08e-05 TTTTTTATTTG
hb64+18.08e-05 TTTTTTGTCAC
hb40+18.08e-05 TTTTTTCTGCT
hb9+18.08e-05 CTTTTTATGAC
hb52+18.88e-05 GTTTTTATGAG
hb86+11.07e-04 GTTTTTATGAC
hb18+11.07e-04 CTTTTTATGAT
hb7+11.07e-04 TTTTTTAATGG
hb92+11.27e-04 TTTTTTATTTT
hb61+11.27e-04 TTTTTTGTTTG
hb37+11.27e-04 TTTTTTAGTCC
hb23+11.27e-04 TTTTTTGCCGC
hb77+11.36e-04 ATTTTTGTGCC
hb39+11.36e-04 TTTTTTGTTTC
hb76+11.62e-04 CTTTTTATTGG
hb13+11.62e-04 TTTTTTAATGT
hb73+11.86e-04 TTTTTTGTTTT
hb68+11.86e-04 ATTTTTGTGGT
hb55+11.86e-04 CTTTTTATGTT
hb48+11.86e-04 TTTTTTGTCTT
hb47+11.86e-04 TTTTTTGTTTT
hb84+12.00e-04 GTTTTTACGAG
hb56+12.00e-04 TTTTTTCTTCC
hb41+12.00e-04 TTTTTTTTGAT
hb31+12.36e-04 CTTTTTAAGCT
hb6+12.36e-04 TTTTTTGCCAT
hb5+12.66e-04 ATTTTTAAGGG
hb2+12.66e-04 ATTTTTAAGCG
hb83+12.95e-04 TTTTTTAATTC
hb20+12.95e-04 GTTTTTAAGAG
hb12+12.95e-04 TTTTTTCAGAC
hb87+13.31e-04 TTTTTTTGGCC
hb54+13.31e-04 TTTTTTTTCCC
hb44+13.31e-04 TTTTTTATTAA
hb35+13.31e-04 TTTTTTGGGCA
hb34+13.31e-04 TTTTTTGGCAT
hb79+13.66e-04 TTTTTTCCCCG
hb15+13.66e-04 TTTTTTGCTTT
hb75+14.05e-04 GTTTTTAAGAT
hb22+14.05e-04 TTTTTTTTCAG
hb70+14.36e-04 TTCTTTGTGGC
hb24+14.79e-04 TTTTTTCCCGT
hb17+14.79e-04 CTTTTTCTGAT
hb78+15.66e-04 GTTTTTAATGC
hb8+15.66e-04 TTTTTTACCAA
hb3+15.66e-04 ATTTTTTTGCG
hb71+16.12e-04 ATTTTTAGTGG
hb66+16.12e-04 CTTTTTGGCCC
hb59+16.12e-04 ATTTTTAGCGG
hb60+16.66e-04 ATTTTTAGTGC
hb11+17.23e-04 GTTTTTCAGGG
hb21+17.73e-04 GTTTTTTCGCG
hb82+18.42e-04 CTTTTTTCGCT
hb80+18.90e-04 TTCTTTGTTCC
hb19+18.90e-04 GTTTTTACTTT
hb27+11.02e-03 TTTTTTGTAAC
hb42+11.07e-03 CTTTTTGGGAA
hb38+11.13e-03 CTTTTTCCCGT
hb33+11.13e-03 ATTTTTTTCCC
hb25+11.13e-03 TTTTTTACAAG
hb69+11.40e-03 CTCTTTACGGT
hb57+11.40e-03 ATTTTTGCGTA
hb88+11.64e-03 TTTTTCAAGGC
hb50+11.64e-03 GTTTTTGACCA
hb14+11.91e-03 CTTTTTTGCAT
hb74+12.18e-03 ATTTTTAGCTA
hb58+12.28e-03 TTCTTTATCTA
hb85+12.50e-03 TTATTTATTTG
hb1+12.61e-03 TTGTTTCTTAT
hb36+14.26e-03 TTGTTTAATTA


Motif 1 block diagrams

NameLowest
p-value
   Motifs
hb49 1e-06
+1
hb4 2e-06
+1
hb91 5e-06
+1
hb90 5e-06
+1
hb62 5e-06
+1
hb26 5e-06
+1
hb45 6.4e-06
+1
hb63 9.7e-06
+1
hb16 1.2e-05
+1
hb93 1.9e-05
+1
hb43 1.9e-05
+1
hb28 1.9e-05
+1
hb10 1.9e-05
+1
hb51 2.6e-05
+1
hb46 2.6e-05
+1
hb30 2.6e-05
+1
hb89 4.1e-05
+1
hb53 4.1e-05
+1
hb81 5e-05
+1
hb65 6.9e-05
+1
hb32 6.9e-05
+1
hb29 6.9e-05
+1
hb72 8.1e-05
+1
hb67 8.1e-05
+1
hb64 8.1e-05
+1
hb40 8.1e-05
+1
hb9 8.1e-05
+1
hb52 8.9e-05
+1
hb86 0.00011
+1
hb18 0.00011
+1
hb7 0.00011
+1
hb92 0.00013
+1
hb61 0.00013
+1
hb37 0.00013
+1
hb23 0.00013
+1
hb77 0.00014
+1
hb39 0.00014
+1
hb76 0.00016
+1
hb13 0.00016
+1
hb73 0.00019
+1
hb68 0.00019
+1
hb55 0.00019
+1
hb48 0.00019
+1
hb47 0.00019
+1
hb84 0.0002
+1
hb56 0.0002
+1
hb41 0.0002
+1
hb31 0.00024
+1
hb6 0.00024
+1
hb5 0.00027
+1
hb2 0.00027
+1
hb83 0.0003
+1
hb20 0.0003
+1
hb12 0.0003
+1
hb87 0.00033
+1
hb54 0.00033
+1
hb44 0.00033
+1
hb35 0.00033
+1
hb34 0.00033
+1
hb79 0.00037
+1
hb15 0.00037
+1
hb75 0.00041
+1
hb22 0.00041
+1
hb70 0.00044
+1
hb24 0.00048
+1
hb17 0.00048
+1
hb78 0.00057
+1
hb8 0.00057
+1
hb3 0.00057
+1
hb71 0.00061
+1
hb66 0.00061
+1
hb59 0.00061
+1
hb60 0.00067
+1
hb11 0.00072
+1
hb21 0.00077
+1
hb82 0.00084
+1
hb80 0.00089
+1
hb19 0.00089
+1
hb27 0.001
+1
hb42 0.0011
+1
hb38 0.0011
+1
hb33 0.0011
+1
hb25 0.0011
+1
hb69 0.0014
+1
hb57 0.0014
+1
hb88 0.0016
+1
hb50 0.0016
+1
hb14 0.0019
+1
hb74 0.0022
+1
hb58 0.0023
+1
hb85 0.0025
+1
hb1 0.0026
+1
hb36 0.0043
+1
SCALE
| |
1 25


Motif 1 in BLOCKS format


to BLOCKS multiple alignment processor.


Motif 1 position-specific scoring matrix


Motif 1 position-specific probability matrix






Time  1.54 secs.


P N
MOTIF 4
    width = 10     sites = 5     llr = 48     E-value = 4.3e-007

SimplifiedAaa2:8:6::a
pos.-specificC::6:2:22a:
probabilityG::24:a24::
matrixT:::6:::4::
.
bits 2.3  
2.1  
1.8     
1.6     
Information 1.4     
content 1.2      
(14.0 bits)0.9        
0.7         
0.5          
0.2          
0.0
.
Multilevel AACTAGAGCA
consensus AGCCT
sequence GGC
.
NAME STRAND START P-VALUE    SITES
 
kni3+13.67e-06 AACTAGATCA
kni4+18.39e-06 AACTAGCGCA
kni5+12.48e-05 AAGTAGATCA
kni1+12.48e-05 AAAGAGAGCA
kni2+16.46e-05 AACGCGGCCA


Motif 1 block diagrams

NameLowest
p-value
   Motifs
kni3 3.7e-06
+1
kni4 8.4e-06
+1
kni5 2.5e-05
+1
kni1 2.5e-05
+1
kni2 6.5e-05
+1
SCALE
| |
1 25


Motif 1 in BLOCKS format


to BLOCKS multiple alignment processor.


Motif 1 position-specific scoring matrix


Motif 1 position-specific probability matrix






Time  0.11 secs.


P N
MOTIF 5
    width = 10     sites = 29     llr = 220     E-value = 9.2e-067

SimplifiedA6995:12::8
pos.-specificC1:12::1:1:
probabilityG2::1a98:11
matrixT1::1:::a71
.
bits 2.3
2.1 
1.8  
1.6   
Information 1.4    
content 1.2      
(10.9 bits)0.9      
0.7        
0.5        
0.2          
0.0
.
Multilevel AAAAGGGTTA
consensus GC
sequence
.
NAME STRAND START P-VALUE    SITES
 
kr7+11.71e-06 AAAAGGGTTA
kr4+11.71e-06 AAAAGGGTTA
kr3+11.71e-06 AAAAGGGTTA
kr22+12.87e-06 AAACGGGTTA
kr29+11.32e-05 AAAAGGGTCA
kr6+11.32e-05 AAAAGGGTTG
kr23+11.79e-05 GAAAGGGTGA
kr16+12.37e-05 AAAAGGGTTT
kr26+13.36e-05 AAACGGATTA
kr17+14.12e-05 AAAAGGCTTA
kr15+14.12e-05 GAACGGGTCA
kr28+14.76e-05 AAATGGGTGA
kr2+14.76e-05 AAAAGAGTTA
kr13+16.67e-05 GAAAGGCTTA
kr8+16.67e-05 CAAAGGGTTT
kr19+17.64e-05 AACTGGGTTA
kr24+18.56e-05 AAAAGGGTAA
kr12+11.00e-04 CAACGGGTTT
kr21+11.24e-04 GAAGGGATTA
kr5+11.24e-04 GAAGGGATTA
kr11+11.48e-04 CAAAGGGTTC
kr25+12.25e-04 GACCGGGTTG
kr10+13.08e-04 AAAAGGGGCA
kr1+13.33e-04 AAAAGGATGG
kr14+16.01e-04 GAAGGAGTGA
kr18+11.02e-03 CCACGGATTA
kr27+11.09e-03 TAACTGGTTA
kr20+11.38e-03 TATTGGGTTA
kr9+13.70e-03 AGCTGAGTTA


Motif 1 block diagrams

NameLowest
p-value
   Motifs
kr7 1.7e-06
+1
kr4 1.7e-06
+1
kr3 1.7e-06
+1
kr22 2.9e-06
+1
kr29 1.3e-05
+1
kr6 1.3e-05
+1
kr23 1.8e-05
+1
kr16 2.4e-05
+1
kr26 3.4e-05
+1
kr17 4.1e-05
+1
kr15 4.1e-05
+1
kr28 4.8e-05
+1
kr2 4.8e-05
+1
kr13 6.7e-05
+1
kr8 6.7e-05
+1
kr19 7.6e-05
+1
kr24 8.6e-05
+1
kr12 0.0001
+1
kr21 0.00012
+1
kr5 0.00012
+1
kr11 0.00015
+1
kr25 0.00022
+1
kr10 0.00031
+1
kr1 0.00033
+1
kr14 0.0006
+1
kr18 0.001
+1
kr27 0.0011
+1
kr20 0.0014
+1
kr9 0.0037
+1
SCALE
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1 25


Motif 1 in BLOCKS format


to BLOCKS multiple alignment processor.


Motif 1 position-specific scoring matrix


Motif 1 position-specific probability matrix






Time  0.15 secs.


P N
SUMMARY OF MOTIFS



Combined block diagrams: non-overlapping sites with p-value < 0.0001

NameCombined
p-value
   Motifs
bcd1 7.88e-04

bcd2 1.81e-02

bcd3 1.36e-03

bcd4 3.78e-02

bcd5 6.05e-04

bcd6 2.70e-04

bcd7 1.66e-04
+1
bcd8 2.30e-03

bcd9 6.05e-04

bcd10 6.70e-04

bcd11 1.90e-02

bcd12 7.88e-04

bcd13 1.09e-03

bcd14 6.94e-03

bcd15 1.09e-04
+1
bcd16 4.38e-03

bcd17 5.40e-04

bcd18 2.30e-03

bcd19 1.09e-03

bcd20 1.71e-03

bcd21 1.09e-03

bcd22 2.30e-03

bcd23 4.06e-04

bcd24 2.96e-04

bcd25 1.15e-02

bcd26 1.90e-03

bcd27 2.96e-04

bcd28 7.83e-03

bcd29 2.05e-04

bcd30 1.71e-03

bcd31 8.89e-04

bcd32 2.70e-03

bcd33 5.28e-05
+1
bcd34 1.66e-04
+1
bcd35 1.54e-02

bcd36 4.91e-03

bcd37 1.54e-02

bcd38 1.29e-02

bcd39 1.71e-03

bcd40 4.07e-03

bcd41 2.70e-04

bcd42 9.63e-03

bcd43 1.36e-03

bcd44 4.06e-02

bcd45 5.28e-05
+1
bcd46 1.36e-03

bcd47 5.28e-05
+1
bcd48 1.36e-03

bcd49 7.22e-03

bcd50 1.09e-04
+1
bcd51 4.38e-03

SCALE
| |
1 25

Motif summary in machine readable format.


Stopped because nmotifs = 1 reached.


CPU: socrates.maths.uq.edu.au


EXPLANATION OF MEME RESULTS

The MEME results consist of:

MOTIFS

For each motif that it discovers in the training set, MEME prints the following information:


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